Course No. 3393.501
Bioinformatics and Practice I

 

Interdisciplinary Bioinformatics Program, Seoul National University

Instructors
Prof. Byoung-Tak Zhang
Prof. Kyu-Won Kim
Prof. Tea-Sung Park
Prof. Ju-Han Kim
TA:
 
 
 
 
(장병탁 교수님 강의 담당)
(김규원 교수님 강의 담당)
(김주한 교수님 강의 담당)
(박태성 교수님 강의 담당)
Classroom
24-210 (301-421, 27-413), 실습 (20-103)
Time
Saturday, 10:00-15:00
Textbook
Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition, Andreas D. Baxevanis and B. F. Francis Ouellette, Wiley Inter-Science, 2001.
Bioinformatics: Sequence and Genome Analysis, David W. Mount, Cold Spring Harbor Laboratory Press, 2001.
Requirements

Objectives
  • Understanding the current issues in bioinformatics
  • Understanding bioinformatics technologies such as microarray, statistical methods and datamining
  • Understanding How to apply bioinformatics technologies can be applied to RNA and protein structure and folding problems, molecular interactions, and genetics and metabolic pathways.
Homeworks

  • Schedule
Date Main Subjects
Week 1

 1. Bioinformatics and Internet

Week 2

 2. The NCBI Data Model

Week 3

 3. The Genbank Sequence Database
 4. Submitting Data Sequences to the Databases
 5. Structure Databases

Week 4

 6. Genomic Mapping and Mapping Databases [pdf slides: B/W, COLOR]

Week 5
 7. Information Retrieval from Biological Databases [pdf slides: B/W, COLOR]
 8. Sequence Alignment and Database Searching [pdf slides: B/W, COLOR]
Week 6
 9. Creation and Analysis of Protein Multiple Sequence Alignments
 - Machine Learning for Biological Data Mining [pdf slides: B/W, COLOR]
 - Artificial Neural Networks [pdf slides: B/W]
Week 7
 11. Predictive Methods Using Protein Sequences 
Week 8

 10. Predictive Methods Using DNA Sequences 

Week 9
 12. Expressed Sequence Tags (ESTs)
Week 10
 13. Sequence Assembly and Finishing Methods
Week 11
 14. Phylogenetic Analysis
Week 12

 15. Comparative Genome Analysis

Week 13

 16. Large-Scale Genome Analysis

Week 14

 17. Using Perl to Facilitate Biological Analysis

  • Acrobat reader 5.0 한글판 (pdf file viewer) download
  • Color Slide는 Acrobat reader 5.0 한글판 버전에서 보입니다.

This page is maintained by Je-Jun Joung (jgjoung@bi.snu.ac.kr).
Last update: April 9, 2002.
 


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