Course No. 3393.501 Bioinformatics
and Practice I |
¡¡ |
Interdisciplinary Bioinformatics Program, Seoul
National University |
Instructors |
- Prof. Byoung-Tak
Zhang
- Prof. Kyu-Won Kim
- Prof.
Tea-Sung Park
- Prof.
Ju-Han Kim
|
TA: |
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|
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Classroom |
- 24-210 (301-421, 27-413), ½Ç½À
(20-103)
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Time |
- Saturday,
10:00-15:00
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- Textbook
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- Bioinformatics: A
Practical Guide to the Analysis
of Genes and Proteins, Second Edition, Andreas
D. Baxevanis and B. F. Francis Ouellette,
Wiley Inter-Science, 2001.
- Bioinformatics: Sequence and Genome Analysis, David
W. Mount,
Cold Spring Harbor Laboratory Press, 2001.
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- Requirements
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- Objectives
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- Understanding the current issues in bioinformatics
- Understanding bioinformatics technologies
such as microarray, statistical
methods and datamining
- Understanding
How to apply bioinformatics technologies
can be applied to RNA and protein
structure and folding problems,
molecular interactions, and genetics
and metabolic pathways.
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- Homeworks
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Date |
Main Subjects
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Week 1
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1. Bioinformatics and Internet
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Week 2
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2. The NCBI Data Model |
Week 3
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3. The Genbank Sequence Database 4. Submitting Data Sequences to the Databases 5. Structure Databases
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Week 4 |
6. Genomic Mapping and Mapping Databases [pdf slides: B/W,
COLOR]
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Week
5
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7. Information Retrieval from Biological Databases [pdf slides: B/W,
COLOR] 8. Sequence Alignment and Database Searching [pdf slides: B/W,
COLOR] |
Week
6 |
9. Creation and Analysis of Protein Multiple Sequence Alignments - Machine Learning for Biological
Data Mining [pdf slides: B/W,
COLOR] - Artificial
Neural Networks [pdf slides: B/W] |
Week
7
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11. Predictive Methods Using Protein Sequences |
Week
8
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10. Predictive Methods Using DNA Sequences
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Week
9
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12. Expressed Sequence Tags (ESTs) |
Week
10
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13. Sequence Assembly and Finishing Methods |
Week
11
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14. Phylogenetic Analysis |
Week
12
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15. Comparative Genome Analysis
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Week
13
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16. Large-Scale Genome Analysis
|
Week
14
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17. Using Perl to Facilitate
Biological Analysis
|
- Acrobat
reader 5.0 ÇÑ±ÛÆÇ (pdf file
viewer) download
- Color Slide´Â Acrobat reader
5.0 ÇÑ±ÛÆÇ ¹öÀü¿¡¼ º¸ÀÔ´Ï´Ù.
This page is maintained by Je-Jun Joung (jgjoung@bi.snu.ac.kr). Last update:
April 9, 2002. |
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Lab] [BTZhang's Home Page] [Dept. of Computer
Eng.] | |