Course No. 3393.505 Biological
Sequence Analysis |
¡¡ |
Interdisciplinary Bioinformatics Program, Seoul
National University |
Instructor |
- Prof. Byoung-Tak
Zhang
|
TA: |
- Jang-Min Oh, jmoh@bi.snu.ac.kr, Tel.: 880-1847, Room 301-419 ¿ÀÀå¹Î 12¿ù20ÀϺÎÅÍ 4ÁÖ°£ ÀÚ¸® ºñ¿ó´Ï´Ù. º¸°í¼¸¦ ¿ÀÀå¹Î¿¡°Ô º¸³»Áö ¸¶¼¼¿ä... Àý´ë·Î
- ¾öÀçÈ«, [E-mail addr. was deleted for anti spam], Tel.: 880-1847, Room 301-419 (ÇÁ·ÎÁ§Æ®1Á¦Ãâ)
- Áö¼º¿í, swchi@cbit.snu.ac.kr, Tel.: 880-5890, Room 138-409 (ÇÁ·ÎÁ§Æ®2Á¦Ãâ)
|
- ¡¡
|
Classroom |
- 18-403
|
Time |
- Wednesday,
9:15-12:00
|
- Textbook
|
- Biological
Sequence Analysis: Probabilistic
Models of Proteins and Nucleic Acids, Richard
Durbin. S. Eddy, A. Krogh, G. Mitchison.
|
- Requirements
|
- Two exams: 40 %, two projects: 40%, homeworks: 15%, class participation:
5%
Project 1: Gene finding with probabilistic
models Project 2: Analysis in
RNA sequences
with probabilistic models |
- Objectives
|
- Understanding probabilistic models, particularly
hidden Markov models (HMMs).
- Understanding
analysis of a wide variety of sequence
analysis problems.
|
Date |
Main Subjects
|
Week 1
|
Introduction (Chap 1) [pdf slids (Slide A: COLOR,
B/W)
(Slide B: COLOR,
B/W)]
|
Week 2
|
Background on probability (Chap 11) [pdf slids COLOR,
B/W]
|
Week 3 |
Background on probability (Chap 11)
|
Week 4
|
Pairwise alignment (Chap 2) [pdf slids COLOR,
B/W] |
Week 5 Week 6
|
Markov chains and hidden Markov models (Chap 3) [pdf slids
#1 COLOR,
B/W][pdf slids
#2 COLOR,
B/W]
|
Week 7
|
Assignment
of Project (Project): HMM
Tutorial, HMMER
Tutorial
|
Click!
|
Week 8 |
Midterm Exam |
Week
9
|
Pairwise alignment using HMMs (Chap 4) [ppt slide:
PPT]
|
Week
10
|
Profile HMMs for sequence families (Chap 5) [ppt slide: PPT] |
Week
11
|
Project Midterm Presentations: Schedule |
Week
12
|
Multiple sequence alignment
methods (Chap 6)[ppt slide:
PPT]
|
Week
13
|
Transformational grammars (Chap 9) |
Week
14
|
°úÁ¦ ¹ßÇ¥
|
Week
15
|
Final Exam(12¿ù18ÀÏ)
|
|
º¸°í¼Á¦Ãâ ¸¶°¨(12¿ù16ÀÏ)
|
¡¡ |
Back to [BI
Lab] [BTZhang's Home Page] [Dept. of Computer
Eng.] | |