Course 3393.501A:
Bioinformactics and Practice 1 (JAVA)

School of Computer Science and Engineering, Seoul National University
Instructor: Prof. Byoung-Tak Zhang
TA: Min-Oh Heo, Hyun-Woo Kim, Young-Kil Ko (Room : 301-417, Tel : 880-1835)
       Jung-Woo Ha, Jin-Seok Nam, Woongchang Yoon (Room : 301-419, Tel : 880-1847)
Classroom: 018-206
Time: Wed 16:00-17:50
Objectives
- To understand the principles of computer programming with JAVA
- To be able to read and understand JAVA Platform, Standard Edition 6 API Specification
- To understand Object-Oriented Programming (OOP) paradigm

Textbook
• Java: Introduction to Problem Solving and Programming 5th edition, Walter Savitch and Frank M. Carrano , Prentice Hall, 2008.
References
1. JAVA Platform, Standard Edition 6 API Specification
2. Head First JAVA 2nd edition, Kathy Sierra and Bert Bates, O'Reilly, 2005.
3. Thinking in JAVA 4th edition, Bruce Eckel, Prentice Hall, 2006.
4. Code Conventions for the Java Programming Language
5. How to Write Doc Comments for the Javadoc Tool
6. Eclipse, an open source JAVA IDE
7. BlueJ, a Java IDE specifically designed to learn and teach object-oriented programming and Java
Evaluation:
midterm (30%), final (35%), Programming assignments and projects (35%)

Schedule

Topic	Lecture notes
1. Introduction to Computers and JAVA	Chapter 1
2. Primitive Types, Strings, and Console I/O	Chapter 2
3. Flow of Control	Chapter 3
4. Flow of Control: Loops	Chapter 4
5. Defining Classes and Methods	Chapter 5
6. More About Objects and Methods	Chapter 6
7. Arrays	Chapter 7
Mid-term Exam	April. 29
8. Polymorphism and Inheritance	Chapter 8
9. Exception Handling	Chapter 9
10. Streams and File I/O	Chapter 10
11. Recursion	Chapter 11
12. Dynamic Data Structures and Generics	Chapter 12
Final Exam	Jun. 10




Code Samples

Code Sample 1

Code Sample 2

Code Sample 3

Code Sample 4

Code Sample 5

Code Sample 6

---

Board
Related Links

Bioinformatics and Practice 1 (JAVA) Course in 2008 Spring
Bioinformatics and Practice 1 (JAVA) Course in 2007 Spring
Bioinformatics and Practice 1 (JAVA) Course in 2006 Spring
Bioinformatics and Practice 1 (JAVA) Course in 2005 Spring
Bioinformatics and Practice 1 (JAVA) Course in 2004 Spring

This Page is maintained by Min-Oh Heo
Last Update: March. 5, 2009.