Biological Network seminar

  + Time and Place
   
 Time:  Thu. 10:30 - 12:00
     Place: 301 - 412 seminar room

Neuroscience

Year Title Journal
2002

A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules

Science
2001

A comprehensive two-hybrid analysis to explore the yeast protein interactome

PNAS 
2002

A Genomic Regulatory Network for Development

Science 
2004

A module map showing conditional activity of expression modules in cancer

Nature Genetics 
2005

A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data

Bioinformatics
2004

A Probabilistic Functional Network of Yeast Genes

Science
2006

A quantitative protein interaction network for the ErbB receptors using protein microarrays

Nature
2006

A simple rule for the evolution of cooperation on graphs and social networks

Nature
2000

A synthetic oscillatory network of transcriptional regulators

Nature
2002 

A systematic approach to reconstructing transcription networks in Saccharomyces cerevisiae

PNAS
2002

A transcription factor response element for gene expression during circadian night

Nature
2002

Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics

PNAS
2006

Asymmetric Coevolutionary Networks Facilitate Biodiversity Maintenance

Science
2006

Bayesian error analysis model for reconstructing transcriptional regulatory networks

PNAS
2006

Circuit diagrams for biological networks

Molecular Systems Biology
2002

Comparative assessment of large-scale data sets of protein–protein interactions

Nature
2004

Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification

NAR
2000

Construction of a genetic toggle switch in Escherichia coli

Nature
2004

Content-rich biological network constructed by mining PubMed abstracts

BMC
2006 Creation and implications of a phenome-genome network Nature
Biotechnology
2006

Deciphering principles of transcription regulation in eukaryotic genomes

Molecular Systems Biology
1999

Emergent Properties of Networks of Biological Signaling Pathways

Science
2002

Engineered gene circuits

Nature
2000

Engineering stability in gene networks by autoregulation

Nature
2002

Evolutionary Rate in the Protein Interaction Network

Science
2005

Formation of Regulatory Patterns During Signal Propagation in a Mammalian Cellular Network

Science
2002

Functional organization of the yeast proteome by systematic analysis of protein complexes

Nature
2002

Gene networks: how to put the function in genomics

Trends in Biotechnology
2000

Global Analysis of the Genetic Network Controlling a Bacterial Cell Cycle

Science
2002

Hierarchical Organization of Modularity in Metabolic Networks

Science
2001

Identifying regulatory networks by combinatorial analysis of promoter elements

Nature Genetics
2001

Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network

Science
2001

Lethality and centrality in protein networks

Nature
1999

Measures of degeneracy and redundancy in biological networks

PNAS
2002

Metabolic network structure determines key aspects of functionality and regulation

Nature
2006

Modeling cellular machinery through biological network comparison

Nature Biotechnology
2002

Network Motifs: Simple Building Blocks of Complex Networks

Science
2000

Neutralizing noise in gene networks

Nature
2000 Noise-based switches and amplifiers for gene expression PNAS
2006

Probabilistic model of the human protein-protein interaction network

Nature Biotechnology
2003

Regulatory Network of Escherichia coli: Consistency Between Literature Knowledge and Microarray Profile

Genome Research
2002

Reverse engineering gene networks using singular value decomposition and robust regression

PNAS
2005

Reverse Engineering of regulatory networks in human B cells

Nature Genetics
2006

Reverse Engineering the Gap Gene Network of Drosophila melanogaster

PLOS
1997

Robustness in simple biochemical networks

Nature
2002

Robustness of the BMP morphogen gradient in Drosophila embryonic patterning

Nature
2005

Signal Processing in Single Cells

Science
2002

Specificity and robustness in transcription control networks

PNAS
2002

specificity and stability in topology of protein networks

Science
2006

Stochastic models for regulatory networks of the genetic toggle switch

PNAS
2002

Synthetic Gene Network for Entraining and Amplifying Cellular Oscillations

The American Physical Society

2002

The identification of functional modules from the genomic association of genes

PNAS
2000

The large-scale organization of metabolic networks

Nature
2000

The segment polarity network is a robust developmental module

Nature
1998

The underlying pathway structure of biochemical reaction networks

PNAS
2002

Transcriptional Regulatory Networks in Saccharomyces cerevisiae

Science
2006

Uncovering a Hidden Distributed Architecture Behind Scale-free Transcriptional Regulatory Networks

J. Mol. Biol.

2002

Untangling the wires: A strategy to trace functional interactions in signaling and gene networks

PNAS
2001

Visualization of biochemical networks in living cells

PNAS
2006

Weak pairwise correlations imply strongly correlated network states in a neural population

Nature


This page is maintained by Soo-Jin Kim (sjkim@bi.snu.ac.kr)
Last update: 2006-07-26
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