Evolutionary Computation in Bioinformatics
(2003. 2)
Participants:
D.-Y. Cho, S. Kim, J.-G. Joung, S.-J. Lee, J.-M. Lee, J.-W. Nam, K.-R. Shin
Time: 13:30 ~ 15:30
Location: 301-421
Date
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Title
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Speaker
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Feb 10
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Determining Genome Sequences from Experimental Data Using Evolutionary Computation(Ch 3)
Using Genetic Algorithms for Pairwise and Multiple Sequence Alignments(Ch 5)
On the Evolutionary Search for Solutions to the Protein Folding Problem(Ch 6)
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J.-G. Joung
J.-W. Nam
D.-Y. Cho
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Feb 12
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Toward Effective Polypeptide Structure Prediction with Parallel Fast Messy Genetic Algorithms(Ch 7)
Identification of Coding Regions in DNA Sequences Using Evolved Neural Networks(Ch 9)
Discovery of Genetic and Environmental Interactions in Disease Data Using Evolutionary Computation(Ch 14)
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J.-M. Lee
S. Kim
S.-J. Lee
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Feb 14
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Identifying Metabolic Pathways and Gene Regulation Networks with Evolutionary Algorithms(Ch 12)
Evolutionary Computational Support for the Characterization of Biological Systems(Ch 13)
Clustering Microarray Data with Evolutionary Algorithms(Ch 10)
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J.-W. Nam
J.-G. Joung
D.-Y. Cho
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Feb 18
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Feature Selection Methods Based on Genetic Algorithms for in Silico Drug Design(Ch 15)
Quantitative Structure-Activity Relationships by Evolved Neural Networks for the Inhibition of Dihydrofolate Reductase by Pyrimidines
O. Ebenhoh and R. Heinrich, Bulletin of Mathemtical Biology, Vol. 63, No. 1, pp. 21-55, January 2001.
Discovery of RNA Structural Elements Using Evolutionary Computation
G. B. Fogel et al., Nucleic Acids Research, Vol. 30, No. 23, pp. 5310-5317, December 2002.
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J.-M. Lee
S. Kim
J.-W. Nam
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Feb 21
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Evolutionary Optimization of Metabolic Pathways
O. Ebenhoh and R. Heinrich, Bulletin of Mathemtical Biology, Vol. 63, No. 1, pp. 21-55, January 2001.
Optimal Stoichiometric Designs of ATP-producing Systems as Determined by an Evolutionary Algorithm
A. Stephani, J. C. Nuno and R. Heinrich, Journal of Theoretical Biology, Vol. 199, No. 1, pp. 45-61, July 1999.
Protein Docking Using a Genetic Algorithm
E. J. Gardiner et al., Proteins: Structure, Function, and Genetics, Vol. 44, No. 1, pp. 44-56, July 2001.
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S.-J. Lee
J.-G. Joung
D.-Y. Cho
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Feb 25
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Hybrid Genetic Algorithm for DNA Sequencing with Errors
J. B©©azewicz, M. Kasprzak, and W. Kuroczycki, Journal of Heuristics, Vol. 8, pp. 495-502, 2002.
Reverse Engineering of Metabolic Pathways from Observed Data Using Genetic Programming
J. R. Koza et al., The Sixth Pacific Symposium on Biocomputing, pp. 434-445, 2001.
Diversity in Very Large Libraries
L. Weber and M. Almstetter, Molecular Diversity in Drug Design, pp. 93-113, 1999.
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K.-R. Shin
S.-J. Lee
S. Kim
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Feb 28
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Genetic Algorithms Applied to Multi-Class Prediction for the Analysis of Gene Expression Data
C. H. Ooi and Patrick Tan, Bioinformatics, 19(1), pp. 37-44, 2003.
Evolutionary Algorithms for Finding Optimal Gene Sets in Microarray Prediction
J. M. Deutsch, Bioinformatics, 19(1), pp. 45-52, 2003.
Scheduling
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J.-M. Lee
K.-R. Shin
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This page is maintained by Sun Kim (skim@bi.snu.ac.kr).
Last update : February 5, 2003.
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