Evolutionary Computation in Bioinformatics

(2003. 2)


Participants: D.-Y. Cho, S. Kim, J.-G. Joung, S.-J. Lee, J.-M. Lee, J.-W. Nam, K.-R. Shin
Time: 13:30 ~ 15:30
Location: 301-421

Date

Title

Speaker

Feb 10

Determining Genome Sequences from Experimental Data
Using Evolutionary Computation(Ch 3)

Using Genetic Algorithms for Pairwise and
Multiple Sequence Alignments(Ch 5)

On the Evolutionary Search for Solutions
to the Protein Folding Problem(Ch 6)

J.-G. Joung


J.-W. Nam


D.-Y. Cho

Feb 12

Toward Effective Polypeptide Structure Prediction
with Parallel Fast Messy Genetic Algorithms(Ch 7)

Identification of Coding Regions in DNA Sequences
Using Evolved Neural Networks(Ch 9)

Discovery of Genetic and Environmental Interactions
in Disease Data Using Evolutionary Computation(Ch 14)

J.-M. Lee


S. Kim


S.-J. Lee

Feb 14

Identifying Metabolic Pathways and
Gene Regulation Networks with Evolutionary Algorithms(Ch 12)

Evolutionary Computational Support
for the Characterization of Biological Systems(Ch 13)

Clustering Microarray Data with Evolutionary Algorithms(Ch 10)

J.-W. Nam


J.-G. Joung


D.-Y. Cho

Feb 18

Feature Selection Methods Based on Genetic Algorithms
for in Silico Drug Design(Ch 15)

Quantitative Structure-Activity Relationships by Evolved Neural Networks
for the Inhibition of Dihydrofolate Reductase by Pyrimidines

O. Ebenhoh and R. Heinrich, Bulletin of Mathemtical Biology,
Vol. 63, No. 1, pp. 21-55, January 2001.

Discovery of RNA Structural Elements Using Evolutionary Computation
G. B. Fogel et al., Nucleic Acids Research,
Vol. 30, No. 23, pp. 5310-5317, December 2002.

J.-M. Lee



S. Kim



J.-W. Nam

Feb 21

Evolutionary Optimization of Metabolic Pathways
O. Ebenhoh and R. Heinrich, Bulletin of Mathemtical Biology,
Vol. 63, No. 1, pp. 21-55, January 2001.

Optimal Stoichiometric Designs of ATP-producing Systems
as Determined by an Evolutionary Algorithm

A. Stephani, J. C. Nuno and R. Heinrich, Journal of Theoretical Biology,
Vol. 199, No. 1, pp. 45-61, July 1999.

Protein Docking Using a Genetic Algorithm
E. J. Gardiner et al., Proteins: Structure, Function, and Genetics,
Vol. 44, No. 1, pp. 44-56, July 2001.

S.-J. Lee



J.-G. Joung



D.-Y. Cho

Feb 25

Hybrid Genetic Algorithm for DNA Sequencing with Errors
J. B©©azewicz, M. Kasprzak, and W. Kuroczycki, Journal of Heuristics,
Vol. 8, pp. 495-502, 2002.

Reverse Engineering of Metabolic Pathways from Observed Data
Using Genetic Programming

J. R. Koza et al., The Sixth Pacific Symposium on Biocomputing,
pp. 434-445, 2001.

Diversity in Very Large Libraries
L. Weber and M. Almstetter, Molecular Diversity in Drug Design,
pp. 93-113, 1999.

K.-R. Shin



S.-J. Lee



S. Kim

Feb 28

Genetic Algorithms Applied to Multi-Class Prediction
for the Analysis of Gene Expression Data

C. H. Ooi and Patrick Tan, Bioinformatics, 19(1), pp. 37-44, 2003.

Evolutionary Algorithms for Finding Optimal Gene Sets
in Microarray Prediction

J. M. Deutsch, Bioinformatics, 19(1), pp. 45-52, 2003.

Scheduling

J.-M. Lee


K.-R. Shin


-


This page is maintained by Sun Kim (skim@bi.snu.ac.kr).
Last update : February 5, 2003.